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Integrated Proteomics Applications prolucid algorithm
Prolucid Algorithm, supplied by Integrated Proteomics Applications, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/prolucid+algorithm/algorithm+prolucid/pmc12937152-398-6-10
Average 86 stars, based on 1 article reviews
prolucid algorithm - by Bioz Stars, 2026-10
86/100 stars

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Related Articles

Software:

Article Title: Characterizing metabolic drivers of Clostridioides difficile infection with activity-based hydrazine probes
Article Snippet: .. Each “.ms2” file was searched using the ProLuCID algorithm against a reverse-concatenated, non-redundant database of the C. difficile VPI 10463 proteome (NCBI release −05/13/21) and filtered using DTASelect 2.0 within the Integrated Proteomics Pipeline (IP2) software. ..

Article Title: Compositions and methods for activating NRF2-dependent gene expression
Article Snippet: Furthermore, S-lens RF level was set to 60 with a spray voltage value of 2.60 kV and ionization chamber temperature of 300° C. MS2 files were generated and searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform. .. Furthermore, S-lens RF level was set to 60 with a spray voltage value of 2.60 kV and ionization chamber temperature of 300° C. MS2 files were generated and searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform. .. Furthermore, S-lens RF level was set to 60 with a spray voltage value of 2.60 kV and ionization chamber temperature of 300° C. MS2 files were generated and searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform.

Article Title: LKB1-Dependent Regulation of TPI1 Creates a Divergent Metabolic Liability between Human and Mouse Lung Adenocarcinoma
Article Snippet: .. Data generated were searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform. ..

Article Title: SUPPORTING MATERIAL FOR Photoproximity Profiling of Protein-Protein Interactions in Cells
Article Snippet: .. MS2 files were generated and searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform. .. MS2 files were generated and searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform.

Article Title: Placing purines in precision medicine: Targeting a metabolic reliance in KRAS -mutant tumors
Article Snippet: .. Data generated was searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform (Integrated Proteomics Applications, Inc., San Diego, CA). ..

Variant Assay:

Article Title: Chemical tools to expand the ligandable proteome: Diversity-oriented synthesis-based photoreactive stereoprobes.
Article Snippet: .. Raw files were uploaded to Integrated Proteomics Pipeline (IP2) available at (http://ip2.scripps.edu/ip2/mainMenu. html) and MS2 and MS3 files extracted from the raw files using RAW Converter and searched using the ProLuCID algorithm using a reverse concatenated, non-redundant variant of the Human UniProt database (release 2016-07). ..

Article Title: Covalent targeting of splicing in T cells.
Article Snippet: .. The MS2 files were extracted from the raw files using RAW Converter (version 1.1.0.22; available at http://fields.scripps.edu/rawconv/), uploaded to Integrated Proteomics Pipeline (IP2), and searched using the ProLuCID algorithm (publicly available at http://fields.scripps.edu/ downloads.php) using a reverse concatenated, non-redundant variant of the Human UniProt database (release-2016_07). ..

Article Title: Integrated phenotypic screening and chemical proteomics identifies ETF1 ligands that modulate viral translation and replication
Article Snippet: .. Raw files were uploaded to Integrated Proteomics Pipeline (IP2) available at ( http://ip2.scripps.edu/ip2/mainMenu.html ) and MS2 and MS3 files extracted from the raw files using RAW Converter and searched using the ProLuCID algorithm using a reverse concatenated, non-redundant variant of the human (released July 2016) and the Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (released March 2020) UniProt databases. ..

Generated:

Article Title: Compositions and methods for activating NRF2-dependent gene expression
Article Snippet: Furthermore, S-lens RF level was set to 60 with a spray voltage value of 2.60 kV and ionization chamber temperature of 300° C. MS2 files were generated and searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform. .. Furthermore, S-lens RF level was set to 60 with a spray voltage value of 2.60 kV and ionization chamber temperature of 300° C. MS2 files were generated and searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform. .. Furthermore, S-lens RF level was set to 60 with a spray voltage value of 2.60 kV and ionization chamber temperature of 300° C. MS2 files were generated and searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform.

Article Title: LKB1-Dependent Regulation of TPI1 Creates a Divergent Metabolic Liability between Human and Mouse Lung Adenocarcinoma
Article Snippet: .. Data generated were searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform. ..

Article Title: SUPPORTING MATERIAL FOR Photoproximity Profiling of Protein-Protein Interactions in Cells
Article Snippet: .. MS2 files were generated and searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform. .. MS2 files were generated and searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform.

Article Title: Placing purines in precision medicine: Targeting a metabolic reliance in KRAS -mutant tumors
Article Snippet: .. Data generated was searched using the ProLuCID algorithm in the Integrated Proteomics Pipeline (IP2) software platform (Integrated Proteomics Applications, Inc., San Diego, CA). ..



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